rs12167477 chr22:20285918 G>A
- Sequence
gccctctgctgccctctgccggcc[G/A]cctctgtccctgcaggcccagcca
- ASB in cell types
- glioblastoma cells GM12878 (female B-cells lymphoblastoid cell line) Peyer's patch GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.25 | 0.40 | 2.14 | 0.53 | Weak Discordant | |||
| STAG1_HUMAN | 2.75 | 4.40 | 2.32 | n/a | n/a | |||
| RAD21_HUMAN | 1.28 | 0.10 | 1.77 | n/a | n/a |
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Motif analysis
