rs12167875 chr22:20285937 C>G
- Sequence
cggccgcctctgtccctgcaggcc[C/G]agccatctacctgcaggtctggac
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) GM02610 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.61 | 0.44 | 1.73 | 0.92 | Weak Discordant | |||
| STAG1_HUMAN | 2.52 | 4.04 | 1.75 | n/a | n/a | |||
| RAD21_HUMAN | 0.77 | -0.46 | 2.50 | n/a | n/a |
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Motif analysis
