rs12168697 chr22:40711684 C>T

Sequence
ctcaaacaaaacagaacaaaaaaa[C/T]caagtatttacagagacatgagtc
ASB in cell types
BEAS-2B (bronchial epithelium) HCT-116 (colon carcinoma) HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
GCR_HUMAN JUND_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 0.85 0.36 1.9·10-51.00 1.00 n/a No Hit
JUND_HUMAN 1.97 -0.77 1.4·10-31.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  hdl cholesterol,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Uterus,  Whole_Blood

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