rs12174203 chr6:151406447 T>C
- Sequence
cggatctcggctcactgcaagctc[T/C]gcctcctgggatcacgccattctc
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) GM17942 (lymphoblastoid cell) GM18486 (Lymphoblastoid Cell Lines) K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN KAISO_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.40 | 0.61 | 1.33 | 2.04 | Discordant | |||
| KAISO_HUMAN | -2.20 | 2.60 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.33 | -0.10 | 1.08 | n/a | n/a |
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Motif analysis
