rs12186309 chr4:3955688 T>C
- Sequence
tcctggggcggggtcgggacaggg[T/C]gatcctggaagcggggcttcggaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) ESO-26 (Gastroesophageal junction adenocarcinoma)
- ASB for transcription factors
- KLF5_HUMAN CREB1_HUMAN RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KLF5_HUMAN | 1.89 | -2.96 | 1.50 | n/a | No Hit | |||
| CREB1_HUMAN | 2.01 | 0.49 | 1.67 | n/a | No Hit | |||
| RFX1_HUMAN | 2.79 | n/a | 4.00 | -3.07 | Concordant |
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Motif analysis
