rs12186334 chr4:3955364 C>T
- Sequence
cgcagtgagcgcgccgccaggaag[C/T]ggcgctcgaaactctgcagcaaga
- ASB in cell types
- Ishikawa (endometrial adenocarcinoma) SEM (childhood B acute lymphoblastic leukemia) BJ1-hTERT (Human fibroblast telomerase immortalized cell line) SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- ESR1_HUMAN EGR1_HUMAN BRD4_HUMAN ESR2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.69 | -0.44 | 1.60 | n/a | No Hit | |||
| EGR1_HUMAN | 2.04 | -0.99 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.66 | 0.21 | 1.50 | n/a | n/a | |||
| ESR2_HUMAN | 1.67 | 0.25 | 2.00 | n/a | No Hit | |||
| BRD2_HUMAN | 1.58 | -0.76 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood