rs12188498 chr5:154785144 C>A

Sequence
ttttaaactacaaagtttggaagc[C/A]ttcctctttcctggggaaacttgc
ASB for transcription factors
SPI1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 2.14 -4.09 0.021.00 1.50 -1.21 Weak Concordant
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Motif analysis

SPI1_HUMAN Weak Concordant
SPI1_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  homa-b
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Breast_Mammary_Tissue,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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