rs12190238 chr6:41961909 C>T
- Sequence
aatgctgacatcattctttctcag[C/T]tcctcctgctcctacagtttccac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- IKZF1_HUMAN ATF7_HUMAN IKZF2_HUMAN NR2C1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | n/a | 3.10 | 2.12 | n/a | n/a | |||
| ATF7_HUMAN | 0.61 | 4.02 | 2.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -3.05 | 3.21 | 1.00 | n/a | n/a | |||
| NR2C1_HUMAN | n/a | 2.08 | 3.00 | n/a | No Hit | |||
| TIF1B_HUMAN | n/a | 2.90 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Whole_Blood