rs12195503 chr6:41896005 T>G

Sequence
ttgccacagatgacccaagagaga[T/G]tcagctgttttatggaaatccccc
ASB in cell types
K562 (myelogenous leukemia) MOLM14 (Adult acute myeloid leukemia) HepG2 (hepatoblastoma)
ASB for transcription factors
CDK8_HUMAN MNT_HUMAN TAF9B_HUMAN ATF4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CDK8_HUMAN -1.62 2.15 1.004.1·10-5 2.00 n/a n/a
MNT_HUMAN -1.21 1.28 1.006.6·10-3 2.75 n/a No Hit
TAF9B_HUMAN n/a 2.20 1.000.03 3.00 n/a n/a
ATF4_HUMAN n/a 2.79 1.000.03 3.00 n/a No Hit
ATF7_HUMAN -0.52 2.11 0.960.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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