rs12195946 chr6:87926320 G>A
- Sequence
ttagagaaatccacaaagcgctga[G/A]gttggctgtcttgtggtggcgttt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN RUNX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.34 | -1.93 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 1.65 | -1.06 | 1.00 | n/a | n/a | |||
| RUNX3_HUMAN | 2.19 | -1.71 | 1.00 | -0.77 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP cystatin c in serum, hdl cholesterol, microalbuminuria, serum creatinine, total cholesterol, urinary albumin-to-creatinine ratio