rs12196086 chr6:112154441 G>A
- Sequence
ctaattgactcacagtgatgactc[G/A]ttccttcatgggaaacattttaaa
- ASB in cell types
- K562 (myelogenous leukemia) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- ATF3_HUMAN SMCA4_HUMAN SMRC1_HUMAN ARI1B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | n/a | 4.31 | 2.00 | 6.60 | Concordant | |||
| SMCA4_HUMAN | -0.14 | 1.84 | 1.08 | n/a | n/a | |||
| SMRC1_HUMAN | -1.04 | 1.38 | 1.00 | n/a | n/a | |||
| ARI1B_HUMAN | -4.75 | 2.65 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Vagina, Whole_Blood