rs12197708 chr6:169442355 G>T

Sequence
aaacaataaaccatatttacacat[G/T]cctgttaatgttttatgtctgaaa
ASB in cell types
VCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.52 -1.59 5.3·10-41.00 2.00 -0.34 Weak Concordant
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Motif analysis

FOXA1_HUMAN Weak Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  obesity with early age of onset (age >2),  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Esophagus_Muscularis,  Liver,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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