rs12199710 chr6:10403947 A>G
- Sequence
cgcctatagtatgggggtctggag[A/G]tgacagcgaccggaaagcatggcg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) foreskin keratinocyte 22RV1 (prostate carcinoma) bipolar neuron
- ASB for transcription factors
- ANDR_HUMAN STAG1_HUMAN ARNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.24 | -1.29 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.23 | 3.04 | 1.90 | n/a | n/a | |||
| ARNT_HUMAN | -2.33 | 2.58 | 1.00 | 2.57 | Concordant |
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Motif analysis
