rs12201779 chr6:158339341 C>T
- Sequence
agatcacaaggcagaaggtcaggg[C/T]gggatcacaaggtcagggcgaaac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN MAX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.58 | 0.02 | 1.62 | 1.79 | Weak Discordant | |||
| MAX_HUMAN | 1.94 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Sigmoid, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood