rs12201926 chr6:7202086 C>G
- Sequence
tctctccaatcttggttccccttt[C/G]cttgccagcagtttctcagtggcc
- ASB in cell types
- K562 (myelogenous leukemia) MV-4-11 (Childhood acute monocytic leukemia) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAT1_HUMAN HTF4_HUMAN HDAC2_HUMAN NELFA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.02 | 0.43 | 3.00 | -4.90 | Concordant | |||
| HTF4_HUMAN | -1.56 | 1.92 | 2.33 | n/a | No Hit | |||
| HDAC2_HUMAN | -4.89 | 2.70 | 3.00 | n/a | n/a | |||
| NELFA_HUMAN | -0.04 | 2.34 | 3.00 | n/a | n/a | |||
| ZN143_HUMAN | 2.17 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
