rs12202302 chr6:132814725 T>G
- Sequence
tctttaacaagtcaatgcttttgt[T/G]ttttagtgcgttcaagattcaact
- ASB in cell types
- K562 (myelogenous leukemia) D283 Med (medulloblastoma)
- ASB for transcription factors
- NELFA_HUMAN NDF1_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NELFA_HUMAN | 1.97 | -1.91 | 1.50 | n/a | n/a | |||
| NDF1_HUMAN | 1.94 | 1.19 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.09 | 0.92 | 1.00 | -2.36 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Cerebellar_Hemisphere, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood