rs12205662 chr6:89033736 C>T

Sequence
tttctaaagcatcagacaaataaa[C/T]tggcagctccatgccctaataacg
ASB in cell types
CD14+ monocytes HUVEC-C (HUVEC, umbilical vein endothelial cells) MDM(monocyte derived macrophages)
ASB for transcription factors
TF65_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 1.54 -4.10 1.0·10-31.00 2.17 n/a No Hit
STAT1_HUMAN 2.98 -5.49 1.1·10-31.00 2.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GRASP total cholesterol

Download