rs12205779 chr6:166951355 A>G

Sequence
tcacggggagatggttaggcctcc[A/G]gatggctgtgggcaggcctgactg
ASB in cell types
K562 (myelogenous leukemia) OCI-LY7 (diffuse large B-cell lymphoma)
ASB for transcription factors
FOXP1_HUMAN COT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXP1_HUMAN 2.35 -1.83 0.021.00 1.00 n/a No Hit
COT1_HUMAN 2.27 -1.79 0.031.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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