rs12206238 chr6:143546269 C>T

Sequence
ggctaaaatttgacatttatatgc[C/T]ttactttgcagtttcttgatacct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MTG16_HUMAN HDAC2_HUMAN COT1_HUMAN TIF1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTG16_HUMAN 2.69 n/a 1.9·10-151.00 3.00 n/a n/a
HDAC2_HUMAN 2.85 -3.35 5.7·10-51.00 2.00 n/a n/a
COT1_HUMAN 2.83 -2.70 1.6·10-31.00 1.00 n/a No Hit
TIF1A_HUMAN 3.00 -0.20 2.6·10-31.00 1.25 n/a n/a
CEBPB_HUMAN 2.12 -1.81 8.8·10-31.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  asthma,  cystatin c in serum,  hdl cholesterol,  hypertension (early onset hypertension),  infant head circumference,  mitral annular calcium,  triglycerides

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