rs12209420 chr6:56073078 G>A

Sequence
gatacaattgaccttcaacacagt[G/A]tgagtcaacagtgtggtgtatcta
ASB in cell types
22RV1 (prostate carcinoma) adipose
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
22RV1 (prostate carcinoma) 2.40 -1.43 3.3·10-31.00 2.00
adipose 2.49 n/a 8.7·10-31.00 2.50
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  refractive error,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Breast_Mammary_Tissue,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Minor_Salivary_Gland,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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