rs12210301 chr6:142845933 G>A

Sequence
gactggggacagccacttgtggct[G/A]agacaaaggcaggctccccctgcc
ASB in cell types
GM12891 (male B- cells lymphoblastoid cell line) Peyer's patch 22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.01 0.40 1.7·10-41.00 1.17 0.29 Weak Discordant
STAG1_HUMAN 2.81 0.83 9.5·10-31.00 1.00 n/a n/a
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Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GRASP chronic kidney disease,  college completion,  fasting blood glucose,  hdl cholesterol,  years of education

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