rs12210836 chr6:170553368 G>T

Sequence
cggcctctctatctcacgctagtc[G/T]ttgctcctggagggctgcacggcg
ASB in cell types
CD14+ monocytes 22RV1 (prostate carcinoma)
ASB for transcription factors
STAT1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.70 n/a 9.5·10-61.00 2.00 n/a No Hit
ANDR_HUMAN 2.93 -5.44 7.5·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP acute lung injury following major trauma,  fasting blood glucose,  infant head circumference
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Ovary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Uterus,  Whole_Blood

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