rs12211975 chr6:37808446 T>C

Sequence
aagtgcaatgatctatgtcaacta[T/C]tgatggaagtgggtatataaaact
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
FOXA1_HUMAN CUX1_HUMAN SMCA4_HUMAN ARI1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -1.13 1.55 1.001.4·10-3 1.60 n/a No Hit
CUX1_HUMAN 2.26 -1.93 0.021.00 1.00 -4.13 Concordant
SMCA4_HUMAN -0.07 1.18 1.000.02 1.00 n/a n/a
ARI1A_HUMAN 0.41 1.47 0.980.03 1.00 n/a No Hit
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Motif analysis

CUX1_HUMAN Concordant
CUX1_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  infant head circumference,  mitral annular calcium
GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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