rs12212281 chr6:53956278 C>G
- Sequence
atccacaggggctgcagctccccc[C/G]agtggctacagaagagcagctctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) foreskin keratinocyte MS-1 (Small cell lung carcinoma) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN JUN_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.44 | -0.01 | 1.35 | -0.91 | Weak Concordant | |||
| STAG1_HUMAN | 2.48 | -0.83 | 1.56 | n/a | n/a | |||
| RAD21_HUMAN | 2.10 | -0.32 | 1.59 | n/a | n/a | |||
| JUN_HUMAN | 2.29 | -1.77 | 1.50 | n/a | No Hit | |||
| SMC1A_HUMAN | 2.20 | -1.04 | 1.00 | n/a | n/a |
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Motif analysis
