rs12212284 chr6:33673097 T>A

Sequence
ggctcagtgccccatgagactgtg[T/A]gactcacccatgtctgcaagccct
ASB in cell types
RWPE2 tibial nerve A549 (lung carcinoma) HKC8 (kidney proximal tubule cell line)
ASB for transcription factors
CTCF_HUMAN TF65_HUMAN EPAS1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.85 0.08 4.4·10-61.00 1.25 n/a No Hit
TF65_HUMAN 1.28 -1.23 0.041.00 2.00 n/a No Hit
EPAS1_HUMAN 1.64 -0.61 0.041.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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