rs12220105 chr10:34710569 T>C
- Sequence
catgtgactgtcctgtaatatgag[T/C]catttccaatgactcactactttc
- ASB in cell types
- HAEC (human aortic endothelial cells)
- ASB for transcription factors
- JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.51 | 0.23 | 3.00 | -5.40 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Thyroid