rs12220115 chr10:14604549 G>C
- Sequence
cgcgtcgggcggagatccagaaag[G/C]ccgggcatccgcgccgggaggggc
- ASB in cell types
- A549 (lung carcinoma) CD14+ monocytes T47D (invasive ductal carcinoma) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- BCL3_HUMAN CDN1B_HUMAN STAT1_HUMAN CRTC2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BCL3_HUMAN | 0.08 | 2.10 | 2.00 | n/a | n/a | |||
| CDN1B_HUMAN | -0.20 | 1.37 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.27 | -1.33 | 2.00 | n/a | No Hit | |||
| CRTC2_HUMAN | -0.68 | 1.94 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Whole_Blood