rs12223593 chr11:47767530 T>G

Sequence
ggattaccaactgcgctaggcgat[T/G]ggctgttttgacccagagaaggga
ASB in cell types
HepG2 (hepatoblastoma) A549 (lung carcinoma)
ASB for transcription factors
RBM25_HUMAN TYY1_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN n/a 2.16 1.003.5·10-15 2.00 n/a n/a
TYY1_HUMAN 0.83 3.55 0.784.1·10-13 1.64 n/a No Hit
JUN_HUMAN -0.08 1.54 1.000.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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