rs12241001 chr10:133143932 C>T
- Sequence
ttattccaatattataataatcct[C/T]gctctacaatcataacgtaggaaa
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) IPSC-derived bipolar neuron ID00014 (lymphoblastoid cell, DiGeorge syndrome) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.55 | 0.04 | 1.27 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellum, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid