rs12243911 chr10:133144089 A>G
- Sequence
ccttggtctagcggtgatgccagc[A/G]tctgggaagacacccgtcgccgag
- ASB in cell types
- A549 (lung carcinoma) ID00014 (lymphoblastoid cell, DiGeorge syndrome) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) GM23338
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN JUN_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.37 | 0.42 | 1.44 | n/a | No Hit | |||
| RAD21_HUMAN | 1.99 | 0.38 | 1.85 | n/a | n/a | |||
| STAG1_HUMAN | 1.04 | -1.48 | 1.31 | n/a | n/a | |||
| JUN_HUMAN | 1.43 | 0.29 | 2.00 | 0.02 | Weak Discordant | |||
| CDN1B_HUMAN | 1.33 | 0.41 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellum, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid