rs12244200 chr10:38526962 T>A
- Sequence
tggacacgattggaatggaataca[T/A]tggaatgaaatggatttgaaagga
- ASB in cell types
- HepG2 (hepatoblastoma) iPSC derived cardiomyocytes GM12878 (female B-cells lymphoblastoid cell line) Reh (ATCC CRL-8286)
- ASB for transcription factors
- LMNA_HUMAN ETV6_HUMAN CTCF_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMNA_HUMAN | n/a | 2.57 | 3.00 | n/a | n/a | |||
| ETV6_HUMAN | n/a | 3.14 | 4.00 | n/a | No Hit | |||
| CTCF_HUMAN | -0.34 | 2.22 | 3.62 | n/a | No Hit | |||
| ANDR_HUMAN | -2.15 | 2.95 | 2.00 | 1.34 | Weak Concordant | |||
| FOXK2_HUMAN | n/a | 2.71 | 3.00 | n/a | No Hit |
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Motif analysis
