rs12247015 chr10:58385319 A>G
- Sequence
ccgcggctcttattcctcccccgc[A/G]aggccgcccaccggggtacgctct
- ASB in cell types
- adrenal gland upper lobe of left lung prostate gland pancreas
- ASB for transcription factors
- CTCF_HUMAN INT13_HUMAN EGR1_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.34 | 0.48 | 1.31 | 1.42 | Weak Discordant | |||
| INT13_HUMAN | 1.21 | 0.98 | 1.00 | n/a | n/a | |||
| EGR1_HUMAN | 1.14 | -0.19 | 1.40 | -1.23 | Weak Concordant | |||
| SPT5H_HUMAN | 1.45 | -0.48 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Pituitary, Prostate, Stomach, Thyroid, Whole_Blood