rs12247633 chr10:14991571 T>C
- Sequence
ccccaaacccagcaaggtggaagc[T/C]cgctggtgtcctctgcaatgctta
- ASB in cell types
- GM19193 (female B-cells Lymphoblastoid Cell Lines) GM19099 (female B-cells Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma) pancreas
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN TF65_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.72 | 0.10 | 1.65 | 2.33 | Discordant | |||
| STAG1_HUMAN | 1.95 | -0.31 | 2.50 | n/a | n/a | |||
| TF65_HUMAN | 1.82 | -0.10 | 2.17 | -0.35 | Weak Concordant |
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Motif analysis
