rs12248702 chr10:22765955 C>T
- Sequence
aacatgtgcttacttttcaactta[C/T]aaaagaaatgacaagactaatgag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN TBX21_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 1.74 | -1.20 | 1.00 | n/a | n/a | |||
| TBX21_HUMAN | 2.19 | -4.10 | 1.50 | n/a | No Hit | |||
| ELF1_HUMAN | 2.27 | -2.27 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), diastolic blood pressure (dbp), hdl cholesterol