rs12248836 chr10:43886044 G>A
- Sequence
taggctgtcaccaggtggtggggt[G/A]cctgtttgctgctgtctaccttgc
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) PANC1 (pancreatic ductal adenocarcinoma) ID00014 (lymphoblastoid cell, DiGeorge syndrome)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 2.05 | -1.05 | 1.08 | n/a | n/a | |||
| CTCF_HUMAN | 1.52 | 0.56 | 1.49 | 0.28 | Weak Discordant | |||
| RAD21_HUMAN | 1.63 | -0.45 | 1.33 | n/a | n/a |
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Motif analysis
