rs12260772 chr10:31091034 A>T
- Sequence
ttatctttgttctgtggttagctc[A/T]gcctcagaacccctggtccttggc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN SKIL_HUMAN RUNX3_HUMAN RELB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 3.46 | -3.45 | 1.00 | n/a | n/a | |||
| SKIL_HUMAN | 3.56 | -3.90 | 1.00 | n/a | n/a | |||
| RUNX3_HUMAN | 3.21 | n/a | 1.50 | 2.90 | Discordant | |||
| RELB_HUMAN | 2.53 | -2.03 | 1.25 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.68 | n/a | 4.50 | n/a | n/a |
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Motif analysis
