rs12263012 chr10:123009067 G>A
- Sequence
cagtgcggttgctgcgcggcagca[G/A]gctggtgagtgcgttcgaggctgg
- ASB in cell types
- HepG2 (hepatoblastoma) CD14+ monocytes WA09 (embryonic stem cells) CD34+ hematopoietic stem cells
- ASB for transcription factors
- TYY1_HUMAN TP53B_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 3.69 | -0.10 | 1.75 | n/a | No Hit | |||
| TP53B_HUMAN | 3.26 | 1.17 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.61 | -0.56 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, hip bone mineral density (bmd), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood