rs12264384 chr10:3467723 T>C
- Sequence
tttttcagttcagaggaaaacacc[T/C]aacaacaacctcaacaaacacaac
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) HS-ES-2M (Epithelioid sarcoma) foreskin keratinocyte BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- TF65_HUMAN GCR_HUMAN CTCF_HUMAN RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 1.96 | -2.75 | 2.83 | -0.51 | Weak Concordant | |||
| GCR_HUMAN | 0.68 | 0.75 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.07 | 0.29 | 1.46 | n/a | No Hit | |||
| RFX1_HUMAN | 2.34 | -4.88 | 2.00 | -1.93 | Weak Concordant | |||
| NOTC1_HUMAN | 1.14 | n/a | 2.00 | n/a | n/a |
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Motif analysis
