rs12271078 chr11:104705848 G>A

Sequence
gatgtggaagcagagacttattca[G/A]gtatatttgagattagttggtgtg
ASB for transcription factors
SPT5H_HUMAN SMCA4_HUMAN CDK9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPT5H_HUMAN -0.54 1.65 1.009.7·10-3 1.00 n/a n/a
SMCA4_HUMAN 1.18 1.45 0.930.02 1.00 n/a n/a
CDK9_HUMAN 1.36 -0.69 0.031.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  obesity with early age of onset (age >2)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Whole_Blood

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