rs12274420 chr11:26754058 A>G
- Sequence
gacaatgaaagcacggtctaagag[A/G]ccaccagatggcagcctcttcatg
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte Peyer's patch HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.43 | 0.95 | 1.29 | 0.78 | Weak Concordant | |||
| SMC3_HUMAN | 0.06 | 2.24 | 1.89 | n/a | n/a | |||
| RAD21_HUMAN | 0.38 | 1.85 | 1.71 | n/a | n/a | |||
| STAG1_HUMAN | -0.14 | 0.98 | 1.00 | n/a | n/a |
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Motif analysis
