rs12277291 chr11:71787602 A>G
- Sequence
gagtttcaagcgccgcttcctggc[A/G]gcgcgcgccctgcgctccttccgc
- ASB in cell types
- HCT-116 (colon carcinoma) TTC-1240 (Rhabdoid tumor of the kidney) HL-60 (acute myeloid leukemia) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- MBD4_HUMAN MED26_HUMAN ARID2_HUMAN INT11_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MBD4_HUMAN | 2.33 | -0.82 | 1.00 | n/a | n/a | |||
| MED26_HUMAN | 2.32 | -0.91 | 1.00 | n/a | n/a | |||
| ARID2_HUMAN | 2.55 | -0.52 | 1.00 | n/a | n/a | |||
| INT11_HUMAN | 2.49 | -2.03 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood