rs12281053 chr11:62325104 G>T
- Sequence
cgccagccgatccctggggaaaca[G/T]cgcctccttggggccagagcgctg
- ASB in cell types
- K562 (myelogenous leukemia) GM17942 (lymphoblastoid cell) MCF7 (Invasive ductal breast carcinoma) adrenal gland
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMCA4_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.22 | 0.23 | 1.98 | -2.84 | Concordant | |||
| RAD21_HUMAN | 1.53 | 0.47 | 2.62 | n/a | n/a | |||
| SMCA4_HUMAN | 2.71 | -0.56 | 1.47 | n/a | n/a | |||
| STAG1_HUMAN | 2.23 | -2.94 | 4.07 | n/a | n/a | |||
| TRI22_HUMAN | 2.52 | -4.66 | 1.25 | n/a | n/a |
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Motif analysis
