rs12281944 chr11:113289781 G>A
- Sequence
ggctaagactgccaccaagtggcc[G/A]tgccaagaaccacaggaaaccagg
- ASB in cell types
- WA09 (embryonic stem cells) GM12878 (female B-cells lymphoblastoid cell line) T47D (invasive ductal carcinoma) glioblastoma cells
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| WA09 (embryonic stem cells) | 2.28 | 0.44 | 1.38 | |||
| GM12878 (female B-cells lymphoblastoid cell line) | 0.50 | 0.74 | 1.09 | |||
| T47D (invasive ductal carcinoma) | 0.18 | 0.87 | 1.90 | |||
| glioblastoma cells | 0.69 | 0.33 | 1.50 | |||
| foreskin keratinocyte | 0.30 | n/a | 2.67 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood