rs12286374 chr11:132358735 T>C

Sequence
cttcccctacaaacacctgtaggt[T/C]tgaaactgtactcgtggtcctcca
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN SPI1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -0.70 0.93 1.005.2·10-4 1.17 n/a n/a
SPI1_HUMAN -0.13 1.33 1.007.1·10-3 1.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP parkinsons disease
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex

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