rs12347 chr5:7897170 G>A

Sequence
ggaggaagccccagcaaagtatgt[G/A]caagacaacatccagcttcatggc
ASB in cell types
IPSC-derived bipolar neuron GM12890 (Lymphoblastoid Cell Lines) MCF7 (Invasive ductal breast carcinoma) GM23338
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.01 2.29 1.004.5·10-20 2.10 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  total cholesterol,  years of education
GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Amygdala,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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