rs12354554 chr10:38529232 G>T
- Sequence
gaatgtaatggaatggattggaat[G/T]gactagaaaggaattgaaaggaat
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- EP300_HUMAN ZFX_HUMAN CTCF_HUMAN MCM3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 0.32 | 1.80 | 3.38 | n/a | n/a | |||
| ZFX_HUMAN | -0.25 | 2.00 | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.26 | 1.35 | 2.74 | n/a | No Hit | |||
| MCM3_HUMAN | n/a | 3.67 | 3.00 | n/a | n/a | |||
| HDAC1_HUMAN | n/a | 2.79 | 2.00 | n/a | n/a |
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