rs12356860 chr10:41884584 A>C
- Sequence
gaaaggaatggaatggaatcaacc[A/C]gagtgaaatggaatggaatgggat
- ASB in cell types
- iPSC derived cardiomyocytes HeLa S3 (cervical adenocarcinoma) glioblastoma patient-derived cell model GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN LMNA_HUMAN CENPA_HUMAN SQSTM_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | n/a | 3.76 | 2.00 | n/a | No Hit | |||
| LMNA_HUMAN | n/a | 3.08 | 4.00 | n/a | n/a | |||
| CENPA_HUMAN | n/a | 2.74 | 2.00 | n/a | n/a | |||
| SQSTM_HUMAN | -1.56 | 1.59 | 1.00 | n/a | n/a |
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