rs12359825 chr10:43455533 C>T
- Sequence
gtccacgtccgggtcaacgcctga[C/T]gcgccccttcccggctggacgacg
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) GM12890 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- NR2C1_HUMAN TYY1_HUMAN CREB1_HUMAN ZN687_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | 1.63 | -1.63 | 1.00 | n/a | No Hit | |||
| TYY1_HUMAN | -3.01 | 2.89 | 1.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.00 | -0.00 | 1.46 | n/a | No Hit | |||
| ZN687_HUMAN | 2.02 | -1.07 | 1.00 | n/a | n/a | |||
| GABPA_HUMAN | 1.79 | -0.11 | 1.30 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Stomach, Testis, Thyroid