rs12403427 chr1:11908513 C>T

Sequence
accagtggtttttaaccccagcca[C/T]tgagtgatggagggttaccgactc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma) Th2-cells breast tumor
ASB for transcription factors
MAF_HUMAN ANDR_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MAF_HUMAN 2.46 -4.97 6.9·10-31.00 2.75 n/a No Hit
ANDR_HUMAN 1.73 -0.20 0.031.00 1.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cortex,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Lung,  Testis

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