rs125124 chr7:130899925 C>G
- Sequence
tccttctagcccctgtcccacccc[C/G]actccaaggtcgaagttcatttct
- ASB in cell types
- HepG2 (hepatoblastoma) liver GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RXRA_HUMAN HNF4A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RXRA_HUMAN | 2.64 | -0.55 | 1.33 | 1.59 | Weak Discordant | |||
| HNF4A_HUMAN | 1.39 | -0.58 | 1.50 | n/a | No Hit |
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Motif analysis
